hmdb-database
Access Human Metabolome Database (220K+ metabolites). Search by name/ID/structure, retrieve chemical properties, biomarker data, NMR/MS spectra, pathways, for metabolomics and identification.
Security Assessment
About hmdb-database
The hmdb-database skill provides access to the Human Metabolome Database (HMDB), a comprehensive resource containing detailed information on over 220,000 metabolites found in the human body. This skill is essential for researchers and professionals in fields such as metabolomics, clinical chemistry, and biomarker discovery, addressing the need for a centralized database that offers extensive chemical, biological, and clinical data on metabolites. By facilitating easy access to this wealth of information, users can efficiently conduct their research and analyses without having to compile data from multiple sources.
FAQ
How can I search for metabolites?
You can search for metabolites by name, ID, structure, or various biological associations using the HMDB web interface.
What types of data can I retrieve about metabolites?
You can retrieve chemical properties, clinical data, biological context, and analytical data for each metabolite.
Are there bulk download options available?
Yes, HMDB offers bulk data downloads in various formats such as XML, SDF, FASTA, TXT, and CSV/TSV.
Is the HMDB database compatible with cheminformatics tools?
Yes, the database provides metabolite structure files in SDF format, which are compatible with cheminformatics applications.
Do I need permission to use the data for commercial purposes?
Yes, explicit permission from the authors is required for commercial use, along with proper citation of HMDB.
Install hmdb-database
Quick Setup:
- Copy the skill folder to
.claude/skills/ - Claude will automatically detect and use the skill
Repository
K-Dense-AI/claude-scientific-skills