biorxiv-database
Efficient database search tool for bioRxiv preprint server. Use this skill when searching for life sciences preprints by keywords, authors, date ranges, or categories, retrieving paper metadata, downloading PDFs, or conducting literature reviews.
Security Assessment
About biorxiv-database
The biorxiv-database skill is designed to facilitate efficient searches and retrievals of preprints from the bioRxiv preprint server, a crucial resource for researchers in the life sciences. By providing a robust set of tools, this skill addresses the challenges faced by researchers in accessing the latest scientific papers quickly and effectively. It allows users to search for preprints using various criteria such as keywords, authors, date ranges, and specific categories, ensuring that users can find relevant literature that meets their research needs without excessive manual sifting through unrelated documents.
Among the key features of the biorxiv-database skill are its comprehensive search capabilities, including keyword and author searches, date range filtering, and the ability to retrieve detailed metadata for specific papers using their DOI. Furthermore, users can download PDFs for in-depth analysis, making it an invaluable tool for systematic literature reviews and trend analysis in specific research domains. The skill returns structured JSON metadata that includes essential information such as titles, abstracts, DOIs, and citation details, which can aid in citation management and literature tracking.
Target users of this skill include academic researchers, students, and professionals in the life sciences who require timely access to the latest preprints in their fields. It is particularly useful for those conducting systematic reviews, tracking research developments by specific authors, or analyzing trends over designated time periods. By streamlining the search and retrieval process, the biorxiv-database skill enhances the efficiency of literature reviews and supports informed decision-making based on the most current scientific findings.
FAQ
How do I perform a keyword search?
Use the command `python scripts/biorxiv_search.py --keywords 'your keywords'` along with optional date and category filters.
Can I download multiple PDFs at once?
Yes, you can batch process downloads by extracting DOIs from a search result JSON and using a script to download each paper.
What is the output format for search results?
The output is structured in JSON format, including titles, abstracts, DOIs, and citation information.
Is there a limit on the number of papers I can search?
There is no explicit limit on the number of papers, but performance may vary based on the number of results and system capabilities.
What programming language is required to use this skill?
This skill is implemented in Python and requires a Python environment to run.
Install biorxiv-database
Quick Setup:
- Copy the skill folder to
.claude/skills/ - Claude will automatically detect and use the skill
Repository
K-Dense-AI/claude-scientific-skills