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brenda-database

Access BRENDA enzyme database via SOAP API. Retrieve kinetic parameters (Km, kcat), reaction equations, organism data, and substrate-specific enzyme information for biochemical research and metabolic pathway analysis.

17,798stars1,609forksUpdated 1/21/2026
#biochemical-research#metabolic-pathways#soap-api#bRENDA#enzyme-database#python

Security Assessment

Medium Risk(50/100)

Detected risks:

Secret Exposure([SKILL.md] PASSWORD=)
Sensitive File Access([SKILL.md] .env)
Security Score50/100

About brenda-database

The brenda-database skill provides access to the BRENDA enzyme database through a SOAP API, enabling users to retrieve detailed enzyme information essential for biochemical research and metabolic pathway analysis. This skill addresses the need for comprehensive enzyme data, allowing researchers to easily query and access kinetic parameters, reaction equations, and other enzyme characteristics directly from the BRENDA database, which contains extensive data from scientific literature. With over 45,000 enzymes and millions of kinetic data points, this skill serves as a valuable resource for scientists and engineers in the field of biochemistry.

Main features of the brenda-database skill include the ability to retrieve kinetic parameters such as Km and kcat values, obtain reaction equations and stoichiometry, and access information related to specific substrates and organisms. Users can also investigate optimal conditions for enzyme activity, such as pH and temperature, and gather data on enzyme inhibition and activation. This skill is particularly useful for tasks such as metabolic pathway reconstruction, enzyme engineering, and optimization studies, making it suitable for a wide range of applications in biochemical research and development.

Target users of the brenda-database skill include researchers in biochemistry, metabolic engineering, and related fields who require detailed enzyme information for their studies. Additionally, educators and students in the life sciences may find this skill beneficial for learning about enzyme kinetics and metabolic pathways. By providing a straightforward way to access and analyze enzyme data, the brenda-database skill supports users in advancing their research and understanding of biochemical processes.

FAQ

How do I retrieve kinetic parameters using the brenda-database skill?

You can use the `get_km_values` function by providing the EC number of the enzyme and optionally specify the organism or substrate.

Is the brenda-database skill compatible with Python?

Yes, the skill is designed to be used with Python, specifically through the provided functions and examples.

Are there any limitations to the data accessed through the skill?

The skill retrieves data from the BRENDA enzyme database, which may have its own limitations in terms of coverage and the completeness of data for specific enzymes.

What is the maximum number of results I can retrieve at once?

While the skill does not specify a strict limit, it is advised to manage the number of results for better performance and readability.

Can I use this skill for enzyme discovery and metabolic pathway analysis?

Yes, the skill is specifically designed to assist in enzyme discovery and can be utilized for metabolic pathway analysis by retrieving relevant enzyme data.

Install brenda-database

Download and extract the skill files to your .claude/skills/ directory.

Quick Setup:

  1. Copy the skill folder to .claude/skills/
  2. Claude will automatically detect and use the skill

Repository

davila7/claude-code-templates

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